If you hide the Toolbar (T), the little plus sign is off its actual position where it once was.
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In releases 2.55, 2.56 and current svn this shows on the same location for me. (default startup)
But, this visualizing method is on our todo to recode better, I also have several reports where the icon draws completely on wrong place, or not even.
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I tried two different OS (Ubuntu 10.10 and Windows 7) and the icon is off in both. If I remember correctly it was in its right position in either 2.54 or 2.53.
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Well; provide a screenshot of where this showed in default startup for 2.54 and 2.56?
Also make sure you use the builds from blender.org.